New User Information:
New to IPA? Check out the training resources below to get started!
The page below has links to download the IPA client installer
This installer will enable you to access IPA like other desktop applications on your computer
Note: IPA requires an active internet connection to operate
General new user training
Many IPA users are interested in performing pathway analysis on their ‘omics data, such as RNA-seq, scRNA-seq, proteomics, metabolomics and more.
The video linked below will go over how to format your ‘omics dataset as well as how to upload and perform a full “Core Analysis” of it. IPA will predict activated and inhibited pathways, upstream drivers, diseases and functions, and much more.
- Introduction to IPA [00:00 – 14:08]
- Formatting data before uploading to IPA [14:09 – 19:27]
- Data upload [19:28 – 33:18]
- Core Analysis setup in IPA [32:19 – 37:30]
- Exploring canonical pathways [37:35 – 50:57]
- Exploring upstream regulators [59:25 – 73:50]
- Comparison analysis [73:52 – 83:38]
- Creating networks from scratch [83:39 – 93:27]
- Activity prediction [93:28 – 96:14]
- Summary [96:15 – 97:36]
To view a particular segment of the video, move your cursor over the scroll bar and click.
RNA-seq/Proteomics
Example Dataset
Step-by-step instructions
Learn more
scRNA-seq
Example Dataset
Step-by-step instructions
Learn more
Phosphoproteomics
Example Dataset
Step-by-step instructions
Learn more
Metabolomics
Example Dataset
Step-by-step instructions
Learn more
miRNA
Recording
Example Dataset
Step-by-step instructions
Learn more
If you have gone through new user resources above, please consider exploring trainings intended for intermediate users.
We also host live virtual trainings on regular basis. You may sign up by clicking the button.