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Microbial Genomics Solution Resources

Application Notes

Comparative Analysis of Endophytic Bacterial Microbiomes in Grapevine

Comparative
 Analysis of Endophytic Bacterial Microbiomes in Grapevine

Improving Microbiome Sequencing using QIAseq® 16S/ITS Panels

Benchmarks

Microbiome characteristics of induced sputum compared to bronchial fluid and upper airway samples

Functional metagenomics with ease of use and superior performance

Error correction and de novo assembly of high quality microbial reference genomes from PacBio data

Functional Metagenomics technical note

Brochures

Microbial Genomics and Metagenomics

Posters

Whole Genome Sequencing for Antimicrobial Resistance Detection and Surveillance

Related Blog Posts

Gut microbiome diversity after antibiotic treatment

Genomics in “The City Different”

Microbial genomics matters

Functional metagenomics with ease of use and superior performance

Microbial genome assembly made fast and easy

Solutions

The CLC Microbial Genomics Module is part of the Microbial ProSuite bundle, which includes the MetaGeneMark Module, and the CLC Genomics Workbench.

Tutorials

OTU Clustering Step by step

OTU Clustering using Workflows

Typing and Epidemiological Clustering of Common Pathogens (Beta)

Whole Metagenome Functional Analysis (Beta)

Genome Finishing Tutorials

Taxonomic Profiling of Whole Shotgun Metagenomic
Data

OTU Clustering step by step

OTU Clustering using workflows

Taxonomic Profiling of Whole Shotgun Metagenomic Data

Typing and Epidemiological Clustering of Common Pathogens (Beta)

Whole Metagenome Functional Analysis

Aligning contigs manually using the Genome Finishing Module

Videos

Automated contig joining

Align contigs to reference

Align contigs to contigs

Analyze contigs

Create primers and amplicons and sequence PCR products

Video tutorials

OTU Clustering using workflows

Webinars

Taxonomic profiling using shotgun metagenome data

Clinical Metagenomics for Rapid Detection of Enteric Pathogens and Characterization of the Intestinal Microbiome

Microbiome profiling from day one

Whole genome sequencing for outbreak analysis and pathogen typing

Microbiome profiling from day one

White Papers

Characterizing the Microbiome through Targeted Sequencing of Bacterial 16S rRNA and Fungal ITS Regions

Dynamics in the airway microbiome in children with Cystic fibrosis

Detect antimicrobial resistance in extensively drug-resistant bacteria- Salmonella enterica serovar Typhi

Dynamics in the airway microbiome in children with Cystic fibrosis as revealed by 16S rRNA gene sequencing

Characterizing the Microbiome through Targeted Sequencing of Bacterial 16S rRNA and Fungal ITS Regions

High-resolution outbreak tracing and resistance detection using WGS in the case of a Mycobacterium tuberculosis outbreak

Detect antimicrobial resistance in extensively drug-resistant bacteria- Salmonella enterica serovar Typhi

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