An issue was discovered where multiple nucleotide variants (MNV) representing a reference allele would be filtered out when any of the filtering tools listed below was used.
As a consequence of this problem, the number of reads reported as supporting the reference allele could be incorrect after filtering was carried out. If the output was then exported, e.g. to VCF, the incorrect counts would also be exported.
We expect the issue described here to have little or no impact on the identification or interpretation of variant calls within the Workbench.
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CLC Genomics Workbench |
Biomedical Genomics Workbench |
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