Infectious diseases impact public health globally. Pathogen outbreaks affect the life of patients and create a high economical burden.
Early detection and control of outbreaks is therefore key to protecting public health.
Whole genome analysis offers unique advantages when used for typing and characterizing microbial isolates. Whole genome data reveals the full picture providing taxonomic information and insight into factors like antimicrobial resistance. Once a pathogenic microbe is typed and characterized, comparative whole genome SNP analysis is the most accurate path to tracking a pathogen contamination back to the source.
While crucial for outbreak control, whole genome analysis also enables quality control of starter cultures and biotechnologically valuable strains.