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QIAGEN CLC LightSpeed Module

QIAGEN CLC LightSpeed Module provides an all-in-one, ultra-fast NGS analysis solution for hereditary and somatic resequencing. LightSpeed takes raw Fastq files and performs quality trimming, adapter trimming, read mapping, deduplication, local realignment, UMI grouping, primer trimming, QC and germline or somatic (tumor-only or tumor-normal) variant calling in one end-to-end solution. Benchmarking results and details are available in the QIAGEN CLC LightSpeed Module Application Note. LightSpeed is optimized for paired-end short-read sequencing data, and is compatible with any reference sequence.

QIAGEN CLC LightSpeed Module contains the “LightSpeed Fastq to Germline Variants”, “LightSpeed Fastq to Somatic Variants” and “LightSpeed Fastq to Somatic Variants Tumor Normal” tools which can output a read mapping, a variant track, an inversion track and a QC report, enabling a thorough assessment of sample and variant qualities. QIAGEN CLC LightSpeed Module also provides template workflows that make use of these tools to help you analyze whole genome sequencing (WGS), whole exome sequencing (WES) and targeted data. In addition, template workflows providing support for QIAseq Targeted DNA and Targeted DNA Pro panels are available. These workflows provide functionality for annotating variants, extended QC, creating copy number controls, copy number variant detection and additional visualization features.

Figure 1. Workflows and tools provided by QIAGEN CLC LightSpeed Module.

Learn more about the latest improvements to QIAGEN CLC LightSpeed Module.

Downloads

Plugin Manual
Online manual Download manual
Plugin Download
Download plugin
Download CLC LightSpeed Module

Version

Platform support

Download

23.1.0

QIAGEN CLC Genomics Workbench


 [23.9.9]

23.0.2

QIAGEN CLC Genomics Workbench


 [23.0.3]

23.0.0

QIAGEN CLC Genomics Workbench


 [23.0.1]
Server Plugin Download
Download plugin
Download CLC LightSpeed Server Extension

Version

Platform support

Download

23.0.0

QIAGEN CLC Genomics Server


 [23.0.1]

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