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QIAGEN CLC Genome Finishing Module

Fast track to the complete picture

Sequencing repetitive genomic regions with short reads often results in fragmented de novo assemblies. To improve results and convert contigs into high-quality assemblies, a complex process referred to as genome finishing is needed.

QIAGEN CLC Genome Finishing Module was designed to simplify and automate genome finishing, and make this process accessible to scientists without deep understanding of bioinformatics.

The module is a part of  QIAGEN CLC Genomics Premium, our complete, full-feature package for ‘omics data analysis.

Improving assembly quality – fast and easy

Improve your de novo assemblies using Join Contigs. Scaffold contigs using paired-end short reads or long read data and carry out automatic alignment of contigs to each other or to a closely related genome.

Assemble reference genomes faster. QIAGEN CLC Genome Finishing Module provides a suite of tools for analyzing, editing, extending, and ultimately combining contigs to produce high-quality assemblies.

Utility for most commonly sequenced genome types. The module was designed for finishing smaller genomes, making it particularly well-suited for assembling transformation and transfection vectors, microbes, eukaryotic parasites, and fungi. Automated tools for scaffolding or contig joining can be applied to larger genomes as well; however, manual editing is impractical for plant or animal genomes.

We frequently release updates and improvements such as bug fixes or new features. To get a complete overview, please visit the latest improvements page.

 

Find out more

 

Downloads

Plugin Manual
Online manual Download manual
Plugin Download
Download plugin
Download CLC Genome Finishing Module

Version

Platform support

Download

23.0.0

QIAGEN CLC Genomics Workbench


 [23.9.9, 23.0.3, 23.0.1, 23.0]

22.0.0

QIAGEN CLC Genomics Workbench


 [22.0.3, 22.0.2, 22.0.1, 22.0]

21.0.0

QIAGEN CLC Genomics Workbench


 [21.0.6, 21.0.5, 21.0.4, 21.0.3, 21.0.2, 21.0.1, 21.0]

20.0.1

QIAGEN CLC Genomics Workbench


 [20.0.5, 20.0.4, 20.0.3, 20.0.2, 20.0.1, 20.0]

1.9.0

QIAGEN CLC Genomics Workbench


 [12.0.4, 12.0.3, 12.0.2, 12.0.1, 12.0]

1.8.0

Biomedical Genomics Workbench


 [5.0.2, 5.0.1, 5.0.0]

QIAGEN CLC Genomics Workbench


 [11.0.2, 11.0.1, 11.0.0]

1.7.1

Biomedical Genomics Workbench


 [4.1.3, 4.1.2, 4.1.1, 4.1.0, 4.0]

QIAGEN CLC Genomics Workbench


 [10.1.3, 10.1.2, 10.1.1, 10.1.0, 10.0.1, 10.0]

1.6.4

Biomedical Genomics Workbench


 [3.5.4, 3.5.3, 3.5.2, 3.5.1, 3.5]

QIAGEN CLC Genomics Workbench


 [9.5.4, 9.5.3, 9.5.2, 9.5.1, 9.5]

1.6.2

Biomedical Genomics Workbench


 [3.0.1, 3.0]

QIAGEN CLC Genomics Workbench


 [9.0.1, 9.0]

1.5.4

Biomedical Genomics Workbench


 [2.5.4, 2.5.3, 2.5.2, 2.5.1, 2.5, 2.1.2, 2.1.1, 2.1]

QIAGEN CLC Genomics Workbench


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1]

1.5.2

QIAGEN CLC Genomics Workbench


 [8.0]
Server Plugin Download
Download plugin
Download CLC Genome Finishing Server Extension

Version

Platform support

Download

23.0.0

QIAGEN CLC Genomics Server


 [23.0.1, 23.0]

22.0.0

QIAGEN CLC Genomics Server


 [22.0.3, 22.0.2, 22.0.1, 22.0]

21.0.0

QIAGEN CLC Genomics Server


 [21.0.6, 21.0.5, 21.0.4, 21.0.3, 21.0.2, 21.0.1, 21.0]

20.0.1

QIAGEN CLC Genomics Server


 [20.0.5, 20.0.4, 20.0.3, 20.0.2, 20.0.1, 20.0]

1.9.0

QIAGEN CLC Genomics Server


 [11.0.4, 11.0.3, 11.0.2, 11.0.1, 11.0]

1.8.0

Biomedical Genomics Server Solution


 [10.0.2, 10.0.1, 10.0]

QIAGEN CLC Genomics Server


 [10.0.2, 10.0.1, 10.0.0]

1.7.1

Biomedical Genomics Server Solution


 [9.1.3, 9.1.2, 9.1.1, 9.1, 9.0]

QIAGEN CLC Genomics Server


 [9.1.3, 9.1.2, 9.1.1, 9.1.0, 9.0]

1.6.4

Biomedical Genomics Server Solution


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5]

QIAGEN CLC Genomics Server


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5]

1.6.2

Biomedical Genomics Server Solution


 [8.0.1, 8.0]

QIAGEN CLC Genomics Server


 [8.0.1, 8.0]

1.5.4

Biomedical Genomics Server Solution


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1]

QIAGEN CLC Genomics Server


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1]

1.5.2

Biomedical Genomics Server Solution


 [7.0]

QIAGEN CLC Genomics Server


 [7.0]

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