Biomedical research
This tutorial uses the capacities of Biomedical Genomics Analysis plugin to find very low frequency variants in targeted amplicon sequences generated using a QIAGEN GeneRead DNAseq Targeted Panels V2 kit.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench
Required plugin: Biomedical Genomics Analysis plugin (non-commercial).
Microbial genomics
Assemble metagenomes derived from two different groups of samples and investigate their functional differences.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Required plugins: CLC Microbial Genomics Module (commercial), MetaGeneMark (commercial)
This tutorial will take you through the tools available in CLC Microbial Genomics Module to perform typing and epidemiological study of cultured bacteria using the metadata functionalities of the Microbial Genomics module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Required plugin: CLC Microbial Genomics Module (commercial)
This tutorial will take you through the different tools available in CLC Microbial Genomics Module and CLC Genomics Workbench to perform OTU clustering and estimate alpha and beta diversities of microbial communities with the Microbial Genomics module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Plugin required: CLC Microbial Genomics Module (commercial)
Learn how to identify individual constituents of a microbial community, and how to identify microbiome profiles that can be associated with certain sample parameters (metadata). In this example we solve a forensics case where the microbiome of the soil on a suspects boots can be associated with the soil microbiome at a crime scene.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Required plugin: CLC Microbial Genomics Module (commercial)
Learn how easy it is to monitor the evolution of a microbiota over time using the taxonomic profiling tools from CLC Microbial Genomics Module.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Plugin required: CLC Microbial Genomics Module (commercial)
Learn how CLC Genomics Module can analyze metagenomics samples with respect to the presence and abundance of antimicrobial resistance (AMR) with the Drug Resistance Analysis tools and accompanying databases, in particular the integrated up-to-date QIAGEN Microbial Insight - Antimicrobial Resistance database (QMI-AR).
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Plugin required: CLC Microbial Genomics Module (commercial)
Analyze metatranscriptomic Oxford Nanopore MinION reads from SARS-CoV-2 samples using the functionality of the Long Read Support plugin and other CLC Genomics Workbench tools.
Available as a PDF tutorial
QIAGEN CLC Genomics WorkbenchThis tutorial covers the use of the MLST scheme tools, focusing on scheme creation, visualization, and isolate typing.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Plugin required: CLC Microbial Genomics Module (commercial)
Learn how to use the Update Sequence Attribute in Lists tool to annotate sequence lists to create your own microbial reference data for use in various downstream analyses.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Plugin required: CLC Microbial Genomics Module (commercial)
Use the tools in CLC Microbial Genomics Module to analyze viral hybrid capture panel data. Learn how to identify viral strains in a sample and potential virus integration events into a host genome.
Available as a PDF tutorial
QIAGEN CLC Genomics Workbench, QIAGEN CLC Microbial Genomics Module
Required plugin: CLC Microbial Genomics Module (commercial)
