Additional Alignments

This plugin allows for use of three additional alignment methods which are otherwise not distributed with CLC workbenches.

Alignment methods

Three different alignment methods are included in this plugin: ClustalW, ClustalO, and Muscle. For more detailed information on each of the alignment methods we encourage you to read the original research papers and the respective websites of the different methods. This paper describes some of the below mentioned algorithms and their strengths [Edgar and Batzoglou, 2006].

Method Website Publication Platform
ClustalW More information Thompson et al., 1994 Cross-platform
ClustalO More information Sievers et al., 2011 Cross-platform
Muscle More information Edgar, 2004 Cross-platform

When the plugin is installed, you will see the new alignment methods in the Toolbox under Alignments and Trees -> Additional Alignments.

Downloads
Plugin Manual
Plugin Download
Server Plugin Download
Sample to Insight
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