New to BKB? Check out the resources below to learn more!
The fastest and easiest way to get started with BKB-HD is with the API, which sends queries for processing by a remote QIAGEN service.
The BKB Python or R packages provide functionality for working with BKB-HD. To download BKB, use the first link below.
Start with Python package
The package can be installed using: pip3 install bkb-202x.xx-py3-none-any.whl
Start querying bkb:
import bkb
kb = bkb.Bkb.from_api()Start with R package
The package can be installed using: bkb_202x.x.tar.gz
Start querying bkb:
library(bkb) bkb <- bkb::from_api()
Using cypher queries to find relationships | Getting started with Cypher (Link to Neo4j website)
| Cypher query example | Comments |
( Node-1 ) – [ Relationship ] -> ( Node-2 ) | A simple cypher query |
( MyDrug: Chemical ) – [ BindsTo ] -> ( MyGene: Gene ) |
|
( MyDrug: Chemical ) – [ BindsTo ] -> ( MyGene: Gene )– [ causeInd ] -> ( MyInd: Disease ) | Add more relationships |
Example query:
return a_child, z, a, y, a_parent | Find disease nodes adjacent to atopic dermatitis |
Partner with Services to tailor or create notebooks to meet your endpoints faster. We can do the heavy lifting while you get onboarding with a proof-of-concept project.
Looking for more detailed resources? Explore trainings for experienced power users.
We also host live virtual trainings on a regular basis.